*Result*: Computational insights into insect-derived semiochemicals from Formicidae family as potential JAK1 inhibitors: Virtual screening and molecular dynamics studies.

Title:
Computational insights into insect-derived semiochemicals from Formicidae family as potential JAK1 inhibitors: Virtual screening and molecular dynamics studies.
Authors:
Borthakur S; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Biological Sciences and Technology Division, CSIR, North East Institute of Science and Technology, Jorhat, Assam 785006, India., Sarmah P; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Chemical Engineering Group, CSIR-North East Institute of Science and Technology, Jorhat, Assam 785006, India., Saikia M; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Biological Sciences and Technology Division, CSIR, North East Institute of Science and Technology, Jorhat, Assam 785006, India., Dhakal R; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Biological Sciences and Technology Division, CSIR, North East Institute of Science and Technology, Jorhat, Assam 785006, India., Das Gupta D; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Biological Sciences and Technology Division, CSIR, North East Institute of Science and Technology, Jorhat, Assam 785006, India., Kalita J; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Biological Sciences and Technology Division, CSIR, North East Institute of Science and Technology, Jorhat, Assam 785006, India., Verma JS; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Chemical Engineering Group, CSIR-North East Institute of Science and Technology, Jorhat, Assam 785006, India. Electronic address: jitendrasinghverma.neist@csir.res.in., Dutta P; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Biological Sciences and Technology Division, CSIR, North East Institute of Science and Technology, Jorhat, Assam 785006, India. Electronic address: prachurjyadutta.neist@csir.res.in.
Source:
Computational biology and chemistry [Comput Biol Chem] 2026 Feb; Vol. 120 (Pt 2), pp. 108730. Date of Electronic Publication: 2025 Oct 14.
Publication Type:
Journal Article
Language:
English
Journal Info:
Publisher: Elsevier Country of Publication: England NLM ID: 101157394 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-928X (Electronic) Linking ISSN: 14769271 NLM ISO Abbreviation: Comput Biol Chem Subsets: MEDLINE
Imprint Name(s):
Publication: Oxford : Elsevier
Original Publication: Oxford : Pergamon, c2003-
Contributed Indexing:
Keywords: ADMET; Formicidae; JAK1; MM-PBSA; Molecular docking; Molecular dynamic simulation; Semiochemicals
Substance Nomenclature:
EC 2.7.10.2 (Janus Kinase 1)
0 (Protein Kinase Inhibitors)
EC 2.7.10.2 (JAK1 protein, human)
Entry Date(s):
Date Created: 20251018 Date Completed: 20251211 Latest Revision: 20251214
Update Code:
20260130
DOI:
10.1016/j.compbiolchem.2025.108730
PMID:
41109189
Database:
MEDLINE

*Further Information*

*JAK1 is a crucial pharmacological target for treating various inflammatory disorders. Although current JAK inhibitors are effective, they come with significant long-term adverse effects. This prioritises the challenge of developing safer novel JAK inhibitors. Nature presents an extensive array of bioactive compounds, and the vast diversity found within insects constitutes a rich repository for chemical exploration and discovery. This study conducted a virtual screening of the inhibitory effects of semiochemicals derived from insects belonging to the Formicidae (ant) family, sourced from the Pherobase Library, against the human JAK1 target protein co-crystallised with Abrocitinib, a standard inhibitor. The investigation utilized site-specific molecular docking techniques, followed by ADMET profiling and molecular dynamics simulation to assess the interactions and stability of the compounds. This study identified promising compounds exhibiting high binding affinities against the kinase domain of JAK1. A total of 1319 compounds were evaluated, of which six exhibited significant binding affinity and satisfied the requisite ADMET criteria. The two selected compounds, 3-Methyl-4-phenylpyrrole and Methyl 3-indoleacetate with binding affinities -10.1 and -9.0 Kcal/mol respectively were further evaluated via molecular dynamic simulation studies to estimate protein-ligand complex stability. Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) binding free energy calculation showed that 3-methyl-4-phenylpyrrole (ΔG <subscript>bind</subscript> = -48,280.465 kJ/mol) exhibited the strongest binding affinity to the target, surpassing that of Abrocitinib, while methyl 3-indoleacetate demonstrated relatively weak interaction. This extensive computational analysis highlights the potential of insect-derived semiochemical compounds as innovative JAK1 inhibitors for modulating various pro-inflammatory cytokines. However, these results necessitate experimental validation for confirmation.
(Copyright © 2025 Elsevier Ltd. All rights reserved.)*

*Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.*