• *Search*: Linear Programming and Integer Linear Programming in Bioinformatics

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Accurate Flow Decomposition via Robust Integer Linear Programming
Dias, F.H.C. ; Tomescu, A.I.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 21(6):1955-1964 Jan, 2024

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A Method for Inferring Polymers Based on Linear Regression and Integer Programming
Ido, R. ; Cao, S. ; Zhu, J. ; et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 21(6):1623-1632 Jan, 2024

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CDPath: Cooperative Driver Pathways Discovery Using Integer Linear Programming and Markov Clustering
Yang, Z. ; Yu, G. ; Guo, M. ; et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 18(4):1384-1395 Aug, 2021

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Deriving consensus tumor trees using integer linear programming
Smith-Erb, Matthew ; Guang, Ziyun ; Oesper, Layla
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2022 IEEE International Conference on. :3882-3883 Dec, 2022

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InteGene: An Integer Linear Programming Tool for Discovering Approximate Gene Clusters
Florendo, Princess Danielle V. ; Solano, Geoffrey A.
2019 10th International Conference on Information, Intelligence, Systems and Applications (IISA) Information, Intelligence, Systems and Applications (IISA), 2019 10th International Conference on. :1-8 Jul, 2019

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A new integer linear programming formulation for the maximum balanced Bi-clique problem.
Ghadiri, Mohammad Javad ; Bagherian, Mehri
Discrete Mathematics, Algorithms & Applications. Sep2025, p1. 18p.

BIPARTITE graphs BIOINFORMATICS PROTEIN-protein interact... MIXED integer linear pro... GENE expression profilin... GRAPH theory
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A Mixed Integer Linear Program for Post-translational Modification Characterization
Lai, Shengzhi ; Zhao, Peize ; Li, Ning ; et al.
2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :306-313 Dec, 2024

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Molecular Design Based on Artificial Neural Networks, Integer Programming and Grid Neighbor Search
Azam, Naveed Ahmed ; Zhu, Jianshen ; Haraguchi, Kazuya ; et al.
2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :360-363 Dec, 2021

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Strong Optimal Classification Trees.
Aghaei, Sina ; Gómez, Andrés ; Vayanos, Phebe
Operations Research. Jul/Aug2025, Vol. 73 Issue 4, p2223-2241. 19p.

DECISION trees ARTIFICIAL intelligence MATHEMATICAL optimizatio... MIXED integer linear pro... MACHINE learning FAIRNESS …
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