• Suche: Data structures and algorithms for analysis of alternative splicing with RNA-seq data

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HPTAS: An Alignment-Free Haplotype Phasing Algorithm Focused on Allele-Specific Studies Using Transcriptome Data.
Wang J ; Sun Z ; Wang G ; et al.
Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

Polymorphism, Single Nuc... Humans Alleles High-Throughput Nucleoti... Alternative Splicing Gene Expression Profilin... …
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2

Comprehensive assessment of mRNA isoform detection methods for long-read sequencing data.
Su Y ; Yu Z ; Jin S ; et al.
Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Humans RNA Isoforms genetics Software Computational Biology me... High-Throughput Nucleoti... Protein Isoforms genetic... …
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3

On de novo Bridging Paired-end RNA-seq Data
Li, Xiang ; Shao, Mingfu

Quantitative Biology - G... Computer Science - Data... J.3
Report
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4

Data structures and algorithms for analysis of alternative splicing with RNA-Seq data
Schulz, Marcel H.

Alternative Splicing Next Generation Sequenci... Gene Expression Transcript Expression Transcriptome Assembly RNA-Seq
Dissertation
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5

Network-based visualisation and analysis of next-generation sequencing (NGS) data
Wan Mohamad Nazarie, Wan Fahmi Bin ; Freeman, Thomas ; Michoel, Tom

alternative splicing RNA-seq network analysis gene expression
Dissertation
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6

Reconstructing isoform graphs from RNA-Seq data
BERETTA, STEFANO ; BONIZZONI, PAOLA ; RIZZI, RAFFAELLA ; et al.
2012 IEEE International Conference on Bioinformatics and Biomedicine. :1-4

Genomics (q-bio.GN) FOS: Computer and inform... 0301 basic medicine 0206 medical engineering 02 engineering and techn... Computational Engineerin... …
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7

Modeling alternative splicing variants from RNA-Seq data with isoform graphs.
Beretta S ; Bonizzoni P ; Vedova GD ; et al.
Publisher: Mary Ann Liebert, Inc Country of Publication: United States NLM ID: 9433358 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-8666 (Electronic) Linking ISSN: 10665277 NLM ISO Abbreviation: J Comput Biol Subsets: MEDLINE

Algorithms Computational Biology Computer Graphics Databases, Nucleic Acid... Gene Expression Profilin... High-Throughput Nucleoti... …
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8

ELLIPSIS: robust quantification of splicing in scRNA-seq.
Van Hecke M ; Beerenwinkel N ; Lootens T ; et al.
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Humans Glioblastoma genetics Algorithms Single-Cell Gene Express... Alternative Splicing Single-Cell Analysis met... …
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9

Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.
LeGault LH ; Dewey CN
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Algorithms Animals Cell Line Drosophila genetics Drosophila metabolism Humans …
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10

DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Audoux, Jérôme ; Philippe, Nicolas ; Chikhi, Rayan ; et al.
Genome Biol
Genome Biology, Vol 18, Iss 1, Pp 1-15 (2017)

0301 basic medicine QH301-705.5 RNA Splicing [INFO.INFO-DS]Computer S... Method [INFO.INFO-DS] Computer... …
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11

A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data.
Sze SH ; Tarone AM
Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Alternative Splicing gen... Animals Drosophila genetics Polymorphism, Single Nuc... Software Algorithms …
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12

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.
Au KF ; Jiang H ; Lin L ; et al.
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Algorithms Computational Biology me... Humans Polymerase Chain Reactio... Alternative Splicing RNA Splice Sites …
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13

Data structures and algorithms for analysis of alternative splicing with RNA-Seq data
Schulz, M.

Natural Sciences and Mat... Life sciences biology - 570
Dissertation
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14

Reconstructing Isoform Graphs from RNA-Seq data
Beretta, Stefano ; Bonizzoni, Paola ; Della Vedova, Gianluca ; et al.

Quantitative Biology - G... Computer Science - Compu... Computer Science - Data...
Report
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15

An isoform-resolution transcriptomic atlas of colorectal cancer from long-read single-cell sequencing.
Li Z ; Zhang B ; Chan JJ ; et al.
Publisher: Elsevier, Inc Country of Publication: United States NLM ID: 9918284260106676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-979X (Electronic) Linking ISSN: 2666979X NLM ISO Abbreviation: Cell Genom Subsets: MEDLINE

Humans Protein Isoforms genetic... Sequence Analysis, RNA m... Gene Expression Regulati... Alternative Splicing gen... Colorectal Neoplasms gen... …
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16

Statistical, functional, upstream, and downstream analysis of Alternative Splicing
Ferrer-Bonsom, J.A. (Juan Ángel) ; Rubio-Díaz-Cordovés, Á. (Ángel)
Dadun. Depósito Académico Digital de la Universidad de Navarra
instname

Biostatistics Alternative Splicing Cancer RNA-Seq Data analysis
Dissertation
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17

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data.
Mangul S ; Caciula A ; Al Seesi S ; et al.
Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Algorithms Alternative Splicing Humans Likelihood Functions Sequence Alignment Software …
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19

Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data.
Eksi R ; Li HD ; Menon R ; et al.
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Algorithms Animals Cluster Analysis Databases, Protein Humans Mice …
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20

Statistical, functional, upstream, and downstream analysis of Alternative Splicing.
Ferrer-Bonsoms, J.A. (Juan A.) ; Rubio-Díaz-Cordovés, Á. (Ángel)

Data analysis Biostatistics Alternative Splicing Cancer RNA-Seq
Dissertation
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