• Suche: "Gene Expression Profiling methods"

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1

Bgee in 2024: focus on curated single-cell RNA-seq datasets, and query tools
Frederic B Bastian ; Alessandro Brandulas Cammarata ; Sara Carsanaro ; et al.
Nucleic Acids Res
Nucleic acids research, vol. 53, no. D1, pp. D878-D885

0301 basic medicine Internet 0303 health sciences Gene Expression Profilin... Molecular Sequence Annot... Single-Cell Gene Express... …
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2

Evolution of translational control and the emergence of genes and open reading frames in human and non-human primate hearts
Jorge Ruiz-Orera ; Duncan C. Miller ; Johannes Greiner ; et al.
Nat Cardiovasc Res
Nature cardiovascular research 3(10), 1217-1235 (2024). doi:10.1038/s44161-024-00544-7
Nature cardiovascular research, 3(10):1217-1235
Nature Cardiovascular Research

Primates Induced Pluripotent Stem... Article Evolution, Molecular Humans [MeSH] Ribosomes/genetics [MeSH... …
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3

Identification of malignant cells in single-cell transcriptomics data
Andreatta, Massimo ; Garnica Caparros, Josep ; Carmona, Santiago
Commun Biol

Gene Expression Profilin... Gene Expression Regulati... Biomarkers, Tumor / gene... Computational Biology /... Neoplasms / pathology DNA Copy Number Variatio... …
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4

Beyond the nuclear border: single-cell analysis of in situ sequenced human brain tissue using cellular features: single-cell analysis of in situ sequenced human brain tissue using cellular features
Janssen M. Kotah ; Thomas Rust ; Hilmar R. J. van Weering ; et al.
Commun Biol

Microglia/metabolism Cell Nucleus Single-Cell Analysis/met... Neurons/metabolism Humans Brain/metabolism …
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5

Multi-transcriptomics predicts clinical outcome in systemically untreated breast cancer patients with extensive follow-up
Do, Thi T N ; Block, Ines ; Burton, Mark ; et al.
Breast Cancer Res
Do, T T N, Block, I, Burton, M, Sørensen, K P, Larsen, M J, Jylling, A M B, Ejlertsen, B, Lænkholm, A V, Tan, Q, Kruse, T A & Thomassen, M 2025, ' Multi-transcriptomics predicts clinical outcome in systemically untreated breast cancer patients with extensive follow-up ', Breast Cancer Research, vol. 27, 133 . https://doi.org/10.1186/s13058-025-02061-2

Adult Machine learning methods Multi-RNA-based classifi... Breast Neoplasms/genetic... Local/genetics Long Noncoding/genetics …
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6

A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics
Shi, Mengnan ; Méar, Loren ; Karlsson, Max ; et al.
Genome Biol
Genome Biology, Vol 26, Iss 1, Pp 1-21 (2025)
Shi, M, Méar, L, Karlsson, M, Álvez, M B, Digre, A, Schutten, R, Katona, B, Vuu, J, Lindström, E, Hikmet, F, Jin, H, Yuan, M, Li, X, Yang, H, Song, X, Sjöstedt, E, Edfors, F, Oksvold, P, von Feilitzen, K, Zwahlen, M, Forsberg, M, Johansson, F, Mulder, J, Hökfelt, T, Luo, Y, Butler, L, Zhong, W, Mardinoglu, A, Sivertsson, Å, Ponten, F, Fagerberg, L, Lindskog, C, Uhlén, M & Zhang, C 2025, 'A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics', Genome Biology, vol. 26, 152. https://doi.org/10.1186/s13059-025-03616-4
Shi, M, Méar, L, Karlsson, M, Álvez, M B, Digre, A, Schutten, R, Katona, B, Vuu, J, Lindström, E, Hikmet, F, Jin, H, Yuan, M, Li, X, Yang, H, Song, X, Sjöstedt, E, Edfors, F, Oksvold, P, von Feilitzen, K, Zwahlen, M, Forsberg, M, Johansson, F, Mulder, J, Hökfelt, T, Luo, Y, Butler, L, Zhong, W, Mardinoglu, A, Sivertsson, Å, Ponten, F, Fagerberg, L, Lindskog, C, Uhlén, M & Zhang, C 2025, 'A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics', Genome Biology, vol. 26, no. 1, 152, pp. 152. https://doi.org/10.1186/s13059-025-03616-4

Single-cell QH301-705.5 Cell- och molekylärbiolo... Single-Cell Analysis/met... Bioinformatics and Compu... QH426-470 …
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7

Single-Cell Transcriptomic Profiling of Cholangiocyte Organoids Derived from Bile Ducts of Primary Sclerosing Cholangitis Patients
Frank, Anna Katharina ; Chung, Brian K. ; De Novales, Miguel Larraz Lopez ; et al.
Dig Dis Sci
Digestive Diseases and Sciences

Biliary epithelial cells Male Autoimmune liver disorde... In vitro modeling Gene Expression Profilin... Cholangitis, Sclerosing …
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8

Innovative construction of the first reliable catalogue of bovine circular RNAs
Robic, Annie ; Hadlich, Frieder ; Costa Monteiro Moreira, Gabriel ; et al.
RNA Biol
RNA Biology, Vol 21, Iss 1, Pp 716-738 (2024)

lariat-derived circRNA [SDV]Life Sciences [q-bi... circular transcriptome Genetics & genetic proce... bovine circRNAs Sequence Analysis, RNA/m... …
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9

The REMAR (Rhein-Main-Registry) real-world study: prospective evaluation of the 21-gene breast recurrence score® assay in addition to Ki-67 for adjuvant treatment decisions in early-stage breast cancer
Christian Jackisch ; Louiza Anastasiadou ; Sebastian Aulmann ; et al.
Breast Cancer Res Treat

Adult Aged, 80 and over 0301 basic medicine Gene Expression Profilin... Clinical Decision-Making Breast Neoplasms …
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10

Transcriptome analysis of archived tumors by Visium, GeoMx DSP, and Chromium reveals patient heterogeneity
Yixing Dong ; Chiara Saglietti ; Quentin Bayard ; et al.
Nat Commun
Nature Communications, Vol 16, Iss 1, Pp 1-18 (2025)
Nature communications, vol. 16, no. 1, pp. 4400

Paraffin Embedding Lung Neoplasms Humans Gene Expression Profilin... Neoplasms/genetics Transcriptome …
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11

Genome-Wide Differential Airway Gene Expression Analysis Identifies Genes Associated with COPD Comorbidities
Alen Faiz ; Else A. M. D. ter Haar ; Jorine E. Hartman ; et al.
Lung

Male Hypercholesterolemia/gen... Bronchi/metabolism Brief Report Gene Expression Profilin... Hypercholesterolemia …
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12

Novel transcriptomic panel identifies histologically active eosinophilic oesophagitis
Emilie Gueguen ; Yasser Morsy ; Céline Mamie ; et al.
Gut
Gut, vol. 73, no. 7, pp. 1076-1086

Male Adult Adolescent Biopsy Gene Expression Profilin... Eosinophilic Esophagitis …
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13

Spatial transcriptomics reveals substantial heterogeneity in triple-negative breast cancer with potential clinical implications
Wang, Xiaoxiao ; Venet, David ; Lifrange, Frédéric ; et al.
Nat Commun
Nature Communications, Vol 15, Iss 1, Pp 1-22 (2024)

Adult 0301 basic medicine Tertiary Lymphoid Struct... Tumor Microenvironment/g... Science Tertiary Lymphoid Struct... …
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14

Biglycan-driven risk stratification in ZFTA-RELA fusion supratentorial ependymomas through transcriptome profiling
Okonechnikov, Konstantin ; Ghasemi, David R. ; Schrimpf, Daniel ; et al.
Acta Neuropathol Commun
Acta Neuropathologica Communications, Vol 13, Iss 1, Pp 1-12 (2025)

Male Adult Adolescent Oncogene Proteins, Fusio... BGN Research …
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15

Type I interferon signature: a quantitative standardized method for clinical application
Alessandra Tesser ; Paola Bocca ; Massimo Ulivi ; et al.
Clin Exp Immunol
Clinical and experimental immunology, vol. 219, no. 1

Inflammation Male Gene Expression Profilin... data comparison Inflammation/Inflammator... Reproducibility of Resul... …
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16

Data-driven inference of Boolean networks from transcriptomes to predict cellular differentiation and reprogramming.
Chevalier, Stéphanie ; BECKER, Julia Christina ; GUI, Yujuan ; et al.
NPJ Systems Biology and Applications, 11 (1), 105 (2025-09-26)

Animals Gene Expression Profilin... Hematopoiesis/genetics Single-Cell Analysis Humans Algorithms …
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17

Deep profiling of gene expression across 18 human cancers
Qiu, Wei ; Dincer, Ayse B ; Janizek, Joseph D ; et al.
ISSN: 2157-846X ; Nature biomedical engineering, vol. 9, no. 3 (2025) p. 333-355.

info:eu-repo/classificat... Deep Learning Gene Expression Profilin... Gene Expression Regulati... Neoplastic Humans …
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18

SC2Spa:a deep learning based approach to map transcriptome to spatial origins at cellular resolution
Liao, Linbu ; Madan, Esha ; Palma, António M. ; et al.
Liao , L , Madan , E , Palma , A M , Kim , H , Kumar , A , Bhoopathi , P , Winn , R , Trevino , J , Fisher , P , Brakebusch , C H , Kim , G , Kim , J , Gogna , R & Won , K J 2025 , ' SC2Spa : a deep learning based approach to map transcriptome to spatial origins at cellular resolution ' , BMC Bioinformatics , vol. 26 , no. 1 , 148 . https://doi.org/10.1186/s12859-025-06173-6

Deep Learning Single-Cell Analysis/met... Transcriptome Gene Expression Profilin... Sequence Analysis RNA/methods …
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19

High resolution tissue and cell type identification via single cell transcriptomic profiling
Liu, Muyi ; Zheng, Suilan ; Li, Hongmin ; et al.
PLoS One

Single-Cell Analysis / m... Gene Expression Profilin...
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20

Whole blood transcriptome profile identifies motor neurone disease RNA biomarker signatures
Kõks, Sulev ; Rallmann, Karin ; Muldmaa, Mari ; et al.

Adult Aged Biomarkers - blood Case-Control Studies Female Gene Expression Profilin... …
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